The database is called GenBank and is searchable for specific sequences. You will compare your sequence...

The database is called GenBank and is searchable for specific sequences. You will compare your sequence to the database, find the closest matches and create a phylogenetic tree.

Please help with phylogenetic tree and a table using a NCBI (Blast):

the sequence is:

ATGACTAACATCCGTAAATCCCACCCACTAATCAAAATTATCAACCACTCATTCATCGATCTGCCCACCC

CATCAAACATCTCAGCCTGGTGAAACTTTGGCTCCCTGCTAGGAATCTGCTTAATCTTACAAATTCTAAC

CGGACTATTCCTTGCCATACACTACACACCAGACACAATAACTGCCTTCTCATCTGTCGCCCATATCTGT

CGAGACGTGAATTACGGCTGAATTATCCGCTATCTCCATGCCAACGGAGCATCCATATCCTTTATCTGCC

TATTCATCCACGTAGGACGCGGTATCTATTACGGATCATATACCTTCCTAGAAACCTGAAACATCGGAGT

TATCTTACTATTCACTCTAATAGCCACCGCATTCATAGGCTACGTCCTACCATGAGGCCAAATATCCTTC

Expert Solution

gladiator answered 2 years ago

1.The procedure used to align many sequences at the same time is called: * diversity sequence...

1.The procedure used to align many sequences at the same time is called: * diversity sequence alignment multiple sequence alignment local alignment multiple statistical alignment substitution matrix alignment 2.The method of alignment that tries to align regions with high level matches without considering the alignment of the rest of the sequence is called: * global alignment multiple sequence alignment local alignment multiple statistical alignment high level matching alignment 3.The type of sequence alignments that is most suited for finding conserved...

Genome sequences are useful to search DNA databases. Proteomics on the other hand is searchable protein...

Genome sequences are useful to search DNA databases. Proteomics on the other hand is searchable protein sequence data that allows for comparison within and between species. However, protein expression by an organism changes during growth, disease, and the death of cells and tissues. Compare DNA genome and proteome analysis as resources to understand gene regulation. What comparisons can be made to understand gene expression and protein synthesis at various stages of an organisms life cycle?

In sequences and series what is a sequence and what is a series? Mention some types of sequences?

Find sequences that satisfy the following or explain why no such sequence exists: a) A sequence...

Find sequences that satisfy the following or explain why no such sequence exists: a) A sequence with subsequences converging to 1, 2, and 3. b) A sequence that is bounded above, but has no convergent subsequence. c) A sequence that has a convergent subsequence but is unbounded (note: unbounded means not bounded below or not bounded above. d) A sequence that is monotonic and bounded, but does not converge.

Sometimes a data dictionary is called as ‘the database designer’s database’. State and explain your opinion...

Sometimes a data dictionary is called as ‘the database designer’s database’. State and explain your opinion regarding this term and support your position using real-life scenarios.

Copy three sequences and perform a multiple sequence alignment on them. In your alignment, include B73...

Copy three sequences and perform a multiple sequence alignment on them. In your alignment, include B73 and one strain containing the insertion and one that does not. >B73 CGCAACACATGTTAGCACAAGAGTTGCAGGAACACTGTAAGTGAGCGTCTGCTTTT ATATTTTTTCGATTTCTTCTCTTATTGTTTCTCGAGCGCCTAGAGAAGCTCGTTCTTG TACCATCCTTTTCATTTTAGTTGGATGATACTCCCTCCGTCTCATGATATAAGGCGTA ACCACTTTTTATTCTTGTCCCGCAATATAAGGCGTGCTCTCTCTATGCATACGTATAT CGATGCAGTGGTATAGAGACAATTAAATGTATTTCTTGGTCTTTGAACCAGAGGTGG TTACGCCTTATATACTGGGACGGAGGGAGTACTTGTTAAATTTTAAGAAATGTCCAG AGAGTTCAGCAAAGCAATAACATTTGTACTTACCTGTATATGATATATACATGTGGC CTATGAATACTTTTTTCAGCTTTGCTTACTCCGTTTTAATTGGCAGGGGTTATTTGGC TCCTGAGTATGCTATTCGAGGACAGGTGACACGCAAATCAGATGTGTACAGCTTTG GCGTGCTGCTTCTGGAAATTGTTTGCGGGAGATCAAACAGCGATACAAGATTAGCA TACGGAGATCAGATACTCCTCGAAAA Sequence with insertion >Tzi25 CGCAACACATGTTAGCACAAGAGTTGCAGGAACACTGTAAGTGAGCGTCTGCTTTT ATATTTTTTCGATTTCTTCTCTTATTGTTTCTCGAGCGCCTAGAGAAGCTCGTTCTTG TACCATCCTTTTCATTTTAGTTGGATGATACTCCCTCCGTCTCATGATATAAGGCGTA ACCACTTTTTATTCTTGTCCCGCAATATAAGGCGTGCTCTCTCTATGCATACGTATAT CGATGCAGTGGTATAGAGACAATTAAATGTATTTCTTGGTCTTTGAACCAGAGGTGG TTACGCCTTATATACTGGGACGGAGGGAGTACTTGTTAAATTTTAAGAAATGTCCAG AGAGTTCAGCAAAGCAATAACATTTGTACTTACCTGTATATGATATATACATGTGGC CTATGAATACTTTTTTCAGCTTTGCTTACTCCGTTTTAATTGGCAGGGGTTATTTGGC TCCTGAGTATGCTATTCGAGGACAGGTGACACGCAAATCAGATGTGTACAGCTTTG GCGTGCTGCTTCTGGAAATTGTTTGCGGGAGATCAAACAGCGATACAAGATTAGCA TACGGAGATCAGATACTCCTCGAAAAGGTCAAAATGACGCT Sequence without insertion: >A679 CGCAACACATGTTAGCACAAGAGTTGCAGGAACACTGTAAGTGAGCGTCTGCTTTT ATATTTTTCGATTTCTTCTCTTATTTTTTTCTCGAGTGCCTAGAGAAGCTCGTTCTTGT ACCATCCTTTTCATTTTAGTTGGATGATACTTGTTAAATTTAAGAAATGTCCAGAGAG TTCCGCAAAGCAATAACATCTGTACTTACCTGTATATGATATATACATGTGGCCTAT GAATACTTTTTTGAGCTTTGCTTACTCCGTTTTAATTGGCAGGGGTTATTTGGCTCCT GAGTATGCTATTCGAGGACAGGTGACACGCAAATCAGATGTGTACAGCTTTGGCGT GCTGCTTCTGGAAATTGTTTGCGGGAGATCAAACAGCGATACAAGATTAGCATACG GAGATCAGATACTCCTCGAAAAGGTCAGATGACGCT What does this insertion represent (i.e. what type of polymorphism is this and explain

1. A transaction is sequence of database operations that access the database. list and explain the...

1. A transaction is sequence of database operations that access the database. list and explain the six states in which a transaction can exit. 2. Explain the techniques that transaction recovery procedures follow.

In your opinion, why do you think housekeeping genes have simpler promoter sequences than tissue-specific and...

In your opinion, why do you think housekeeping genes have simpler promoter sequences than tissue-specific and dynamically expressed genes?

Question 1: In the NCBI database, retrieve the nucleotide sequences NG011676. Report: Gene name, database name....

Question 1: In the NCBI database, retrieve the nucleotide sequences NG011676. Report: Gene name, database name. Number of exons and its position (the start and the end of each exon). The start and the end of coding region (CDS) Accession number of protein from this gene and the length of polypeptide. Question 2: Use NG011676 to run GenScan. Report the results and compare the results with information of this gene from Question 1. Question 3: Use NG011676 to run FGENESH...

If you wanted to measure expression of DNA at the level of specific transcribed mRNA sequences,...

If you wanted to measure expression of DNA at the level of specific transcribed mRNA sequences, what method could you use? (Describe quantitative reverse-transcription PCR (qRT-PCR).)

Question