Question

In: Biology

Copy three sequences and perform a multiple sequence alignment on them. In your alignment, include B73...

Copy three sequences and perform a multiple sequence alignment on them. In your alignment, include B73 and one strain containing the insertion and one that does not.

>B73

CGCAACACATGTTAGCACAAGAGTTGCAGGAACACTGTAAGTGAGCGTCTGCTTTT ATATTTTTTCGATTTCTTCTCTTATTGTTTCTCGAGCGCCTAGAGAAGCTCGTTCTTG TACCATCCTTTTCATTTTAGTTGGATGATACTCCCTCCGTCTCATGATATAAGGCGTA ACCACTTTTTATTCTTGTCCCGCAATATAAGGCGTGCTCTCTCTATGCATACGTATAT CGATGCAGTGGTATAGAGACAATTAAATGTATTTCTTGGTCTTTGAACCAGAGGTGG TTACGCCTTATATACTGGGACGGAGGGAGTACTTGTTAAATTTTAAGAAATGTCCAG AGAGTTCAGCAAAGCAATAACATTTGTACTTACCTGTATATGATATATACATGTGGC CTATGAATACTTTTTTCAGCTTTGCTTACTCCGTTTTAATTGGCAGGGGTTATTTGGC TCCTGAGTATGCTATTCGAGGACAGGTGACACGCAAATCAGATGTGTACAGCTTTG GCGTGCTGCTTCTGGAAATTGTTTGCGGGAGATCAAACAGCGATACAAGATTAGCA TACGGAGATCAGATACTCCTCGAAAA

Sequence with insertion

>Tzi25

CGCAACACATGTTAGCACAAGAGTTGCAGGAACACTGTAAGTGAGCGTCTGCTTTT ATATTTTTTCGATTTCTTCTCTTATTGTTTCTCGAGCGCCTAGAGAAGCTCGTTCTTG TACCATCCTTTTCATTTTAGTTGGATGATACTCCCTCCGTCTCATGATATAAGGCGTA ACCACTTTTTATTCTTGTCCCGCAATATAAGGCGTGCTCTCTCTATGCATACGTATAT CGATGCAGTGGTATAGAGACAATTAAATGTATTTCTTGGTCTTTGAACCAGAGGTGG TTACGCCTTATATACTGGGACGGAGGGAGTACTTGTTAAATTTTAAGAAATGTCCAG AGAGTTCAGCAAAGCAATAACATTTGTACTTACCTGTATATGATATATACATGTGGC CTATGAATACTTTTTTCAGCTTTGCTTACTCCGTTTTAATTGGCAGGGGTTATTTGGC TCCTGAGTATGCTATTCGAGGACAGGTGACACGCAAATCAGATGTGTACAGCTTTG GCGTGCTGCTTCTGGAAATTGTTTGCGGGAGATCAAACAGCGATACAAGATTAGCA TACGGAGATCAGATACTCCTCGAAAAGGTCAAAATGACGCT

Sequence without insertion:

>A679

CGCAACACATGTTAGCACAAGAGTTGCAGGAACACTGTAAGTGAGCGTCTGCTTTT ATATTTTTCGATTTCTTCTCTTATTTTTTTCTCGAGTGCCTAGAGAAGCTCGTTCTTGT ACCATCCTTTTCATTTTAGTTGGATGATACTTGTTAAATTTAAGAAATGTCCAGAGAG TTCCGCAAAGCAATAACATCTGTACTTACCTGTATATGATATATACATGTGGCCTAT GAATACTTTTTTGAGCTTTGCTTACTCCGTTTTAATTGGCAGGGGTTATTTGGCTCCT GAGTATGCTATTCGAGGACAGGTGACACGCAAATCAGATGTGTACAGCTTTGGCGT GCTGCTTCTGGAAATTGTTTGCGGGAGATCAAACAGCGATACAAGATTAGCATACG GAGATCAGATACTCCTCGAAAAGGTCAGATGACGCT

What does this insertion represent (i.e. what type of polymorphism is this and explain

Solutions

Expert Solution

Question

The result of multiple sequence alignment of three sequences is following :

Figure: MSA result

The insertion represent signify a mutation in which extra nucleotide is added to the nucleotide or protein sequence. Similarly, deletion represent a mutation where one or more nucleotide base get deleted from the sequence.  

The mutation is the phenomeon that change the nucleotide or protein sequence. The mutation could lead to deletion, insertion and substitutions. In this question, Insertion and deletion are present that show "indel polymorphism".


Related Solutions

In the original implementation of PSI-BLAST, the algorithm performed a multiple sequence alignment and deleted all...
In the original implementation of PSI-BLAST, the algorithm performed a multiple sequence alignment and deleted all but one copy of aligned sequence segments having ≥ 98% identity. In a recent modification, the program now purges segments having ≥ 94% identity. What do you think would happen if this percentage were adjusted to ≥ 75% identity. How could you test this idea in practice?
Design a sequence detector to detect either 01 or 10 sequences. Include a reset state. Show...
Design a sequence detector to detect either 01 or 10 sequences. Include a reset state. Show the state transition diagram, state table, K-maps, and complete circuit.
The database is called GenBank and is searchable for specific sequences. You will compare your sequence...
The database is called GenBank and is searchable for specific sequences. You will compare your sequence to the database, find the closest matches and create a phylogenetic tree. Please help with phylogenetic tree and a table using a NCBI (Blast): the sequence is: ATGACTAACATCCGTAAATCCCACCCACTAATCAAAATTATCAACCACTCATTCATCGATCTGCCCACCC CATCAAACATCTCAGCCTGGTGAAACTTTGGCTCCCTGCTAGGAATCTGCTTAATCTTACAAATTCTAAC CGGACTATTCCTTGCCATACACTACACACCAGACACAATAACTGCCTTCTCATCTGTCGCCCATATCTGT CGAGACGTGAATTACGGCTGAATTATCCGCTATCTCCATGCCAACGGAGCATCCATATCCTTTATCTGCC TATTCATCCACGTAGGACGCGGTATCTATTACGGATCATATACCTTCCTAGAAACCTGAAACATCGGAGT TATCTTACTATTCACTCTAATAGCCACCGCATTCATAGGCTACGTCCTACCATGAGGCCAAATATCCTTC
What can you say about the following three sequences? 1 ) sequence = range [0, 100,...
What can you say about the following three sequences? 1 ) sequence = range [0, 100, 7] {0, 7 ,14 ,21 ,28 ,35 ,42 ,49 ,56 ,63 ,70 ,77 ,84 ,91 ,98] 2 ) sequence = range [7, 100, 7] {7, 14, 21, 28, 35, 42, 49, 56, 63, 70, 77, 84, 91, 98} 3 ) sequence = table [ x^2, {x, 0, 17} ] {0, 1, 4, 9, 16, 25, 36, 49, 64, 81, 100, 121, 144, 169, 196,...
If your sample DNA contains 1 copy of the target sequence to amplify, and you run...
If your sample DNA contains 1 copy of the target sequence to amplify, and you run the PCR for only 10 cycles because of an instrument failure, about how many copies of the target sequence should exist in the PCR reaction tube? a) 1 copy, PCR requires at least 20 cycles to amplify the target DNA b) 100 copies c) 1000 copies d) 1,000,000 copies e) Impossible to determine
Write the definition of Endocytosis( include all three of them) and the definition of pinocytosis. Draw...
Write the definition of Endocytosis( include all three of them) and the definition of pinocytosis. Draw the diagrammatic representation of endocytosis and pinocytosis.
Three common discovery tools include: Multiple Choice Interrogatories, motions for judgments on the pleadings, and depositions...
Three common discovery tools include: Multiple Choice Interrogatories, motions for judgments on the pleadings, and depositions Motions for summary judgment, requests to produce documents, and depositions Requests to produce documents, dismissals with prejudice, and depositions Interrogatories, requests to produce documents, and depositions Interrogatories, depositions, and inquisitions
Your organization's database needs include the following: Multiple departments will require access to the database, including...
Your organization's database needs include the following: Multiple departments will require access to the database, including eCommerce, manufacturing, sales, and customer service Employees will use the database to: Enter data Reference data Use data to auto-populate new orders and customer service records Analyze data and create reports Recommend three of the following six database architecture types that would work for your organization: Hierarchical Network Relational Distributed Relational Object-Oriented Cloud Include the following in your recommendation: Your top three recommended architectures,...
select a company of your choice and perform a three years strategic plan for the chosen...
select a company of your choice and perform a three years strategic plan for the chosen company
Run two different multiple regressions using excel. One should include two of the three idepenedent variables...
Run two different multiple regressions using excel. One should include two of the three idepenedent variables and the other should include all three variables. What are the regession equations? Years Weekend Daily Tour Income Daily Gross Revenue Number of Tourists 1 Friday 3378 4838.95 432 1 Saturday 1198 3487.78 139 1 Sunday 3630 4371.3 467 2 Friday 4550 6486.48 546 2 Saturday 2467 3437.39 198 2 Sunday 3593 4571.43 452 3 Friday 898 2515.15 119 3 Saturday 2812 5462.11 342...
ADVERTISEMENT
ADVERTISEMENT
ADVERTISEMENT