Gene A has two alleles, A1 and A2. Gene B has two alleles, B1
and B2....
Gene A has two alleles, A1 and A2. Gene B has two alleles, B1
and B2. In a population, the following haplotypes are observed.
A1B1 = 0.2, A2B2 = 0.45, A1B2 = 0.15, and A2B1 = 0.2. Calculate the
extent of linkage disequilibrium, D.
1. Three pairs of genes with two alleles each (A1 and A2, B1 and
B2, and C1 and C2) influence lifespan in a human population. The
alleles of these genes have an additive relationship and add the
number of years indicated to the lifespan of the individual.
allele
years
A1
15
A2
4
B1
16
B2
8
C1
13
C2
9
a. If lifespan were entirely genetically determined, what is the
minimum possible lifespan and the associated genotype?
b. If...
| | a1 | a2 |
|----|------|------|
| b1 | 0.37 | 0.16 |
| b2 | 0.23 | ? |
1. What is ?(?=?2,?=?2)P(A=a2,B=b2)?
2. Observing events from this probability distribution,
what is the probability of seeing (a1, b1) then (a2,
b2)?
3. Calculate the marginal probability distribution,
?(?)P(A).
4. Calculate the marginal probability distribution,
?(?)P(B).
Let f: X→Y be a map with A1, A2⊂X and
B1,B2⊂Y
(A) Prove
f(A1∪A2)=f(A1)∪f(A2).
(B) Prove
f(A1∩A2)⊂f(A1)∩f(A2).
Give an example in which equality fails.
(C) Prove
f−1(B1∪B2)=f−1(B1)∪f−1(B2),
where f−1(B)={x∈X: f(x)∈B}.
(D) Prove
f−1(B1∩B2)=f−1(B1)∩f−1(B2).
(E) Prove
f−1(Y∖B1)=X∖f−1(B1).
(Abstract Algebra)
a. The Log likelihood function is ?(?) = (a1 + a2) log(?) − ?(b1
+ b2) write this as a function of θ, by substituting in
θ = log(λ).
b. Write down the likelihood equation for θ, using the
log-likelihood in part a, and hence determine θ^ the MLE for θ.
c. Show that θˆlog = (λ^). Show this algebraically, what
property of MLEs is this?
d. Differentiate the LHS of the likelihood equation, obtain the
expected information ?(?) = ?{??(?,...
For a sex-linked gene at which there are two alleles, A1 and A2,
in a population and for which the frequency of A1 is 0.9 in females
and 0.3 in males, what will be the frequency of the A1 allele in
the male offspring (sons) after one generation of random
mating?
V=[(a b), a,b E R+] with (a1 b1)+(a2 b2)=(a1a2
b1b2)and for c E R, c(a b)=(a^c b^c) is a vector space over R.
Define T:R^2 to V by T[a b]= (e^a e^b). prove T is a linear
transformation from R2 to V.
In Python
iOverlap (a1, a2, b1, b2)
Write the function iOverlap that tests whether 2 closed
intervals overlap. It takes 4 numbers (ints or floats) a1, a2, b1,
b2 that describe the two closed intervals [a1,a2] and [b1,b2] of
the real number line, and returns True if these two closed
intervals overlap (even if at only one point) and False otherwise.
If a1>a2, then the interval [a1,a2] is empty. If b1>b2, then
the interval [b1,b2] is empty. Both intervals are...