Use PLAZA to determine the following: A. Gene structure of AT3G05330. B. Build a homology tree...

Use PLAZA to determine the following:

A. Gene structure of AT3G05330.

B. Build a homology tree for this gene with genes from Oryza sativa, Zea mays, and, Solanum lycopersicum species.

C. Find and label the orthologs and paralogs.

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Expert Solution

A. AT3G05330 is a gene structure of Arabidopsis thaliana. PLAZA helps to determine the gene structure AT3G05330 from Arabidopsis thaliana.

B. PLAZA is an assess point for comparative plant genomics, centralizing genomic data generated by various genome sequencing initiatives. It combines plant sequence data and comparative genomics techniques, and offers an online forum for performing evolutionary analysis and data mining in the Viridiplantae (green plant lineage) including Zea mays, Oryza sativa, and Solanum lycopersicum species. AT3G05330 gene structure is not associated with the plants Zea mays, Oryza sativa, and Solanum lycopersicum species.

C. Plaza offers a versatile plateform for the integration of published genomes of plants to study the evolution of genome and its function. Pre-computed data sets on comparative genomics include homologous gene families, phylogenetic trees, multiple sequence alignments, whole genome dot plots of intraspecies, and information on genomic colinearity between organisms. PLAZA using orthologs and paralogs in phylogenetic trees.

gladiator answered 1 year ago

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