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In: Computer Science

USING JAVA: complete these one method in the BasicBioinformatics class /** * Class BasicBioinformatics contains static...

USING JAVA: complete these one method in the BasicBioinformatics class

/**

* Class BasicBioinformatics contains static methods for performing common DNA-based operations in

* bioinformatics.

*

*/

public class BasicBioinformatics {

/**

* Calculates and returns the reverse complement of a DNA sequence. In DNA sequences, 'A' and 'T'

* are complements of each other, as are 'C' and 'G'. The reverse complement is formed by

* reversing the symbols of a sequence, then taking the complement of each symbol (e.g., the

* reverse complement of "GTCA" is "TGAC").

*

* @param dna a char array representing a DNA sequence of arbitrary length, containing only the

* characters A, C, G and T

*

* @return a char array representation of the reverse complement of the given sequence

*/

public static char[] reverseComplement(char[] dna) {

// TODO

}

/**

* Calculates and returns the reverse complement of a DNA sequence. In DNA sequences, 'A' and 'T'

* are complements of each other, as are 'C' and 'G'. The reverse complement is formed by

* reversing the symbols of a sequence, then taking the complement of each symbol (e.g., the

* reverse complement of "GTCA" is "TGAC").

*

* @param dna a string representing a DNA sequence of arbitrary length, containing only the

* characters A, C, G and T

*

* @return a String representation of the reverse complement of the given sequence

*/

public static String reverseComplement(String dna) {

return new String(reverseComplement(dna.toCharArray()));

} }

Expert Solution

Code

/*
* To change this license header, choose License Headers in Project Properties.
* To change this template file, choose Tools | Templates
* and open the template in the editor.
*/
/**
*
* @author JOSEE
*/
public class BasicBioinformatics {

/**
* Calculates and returns the reverse complement of a DNA sequence. In DNA sequences, 'A' and 'T'
* are complements of each other, as are 'C' and 'G'. The reverse complement is formed by
* reversing the symbols of a sequence, then taking the complement of each symbol (e.g., the
* reverse complement of "GTCA" is "TGAC").
*
* @param dna a char array representing a DNA sequence of arbitrary length, containing only the
* characters A, C, G and T
*
* @return a char array representation of the reverse complement of the given sequence
*/
public static char[] reverseComplement(char[] dna)
{
int i, k;
char temp;
int size=dna.length;
//reverse the dna array
for (i = 0; i < size / 2; i++) {
temp = dna[i];
dna[i] = dna[size - i - 1];
dna[size - i - 1] = temp;
}
//then change DNA sequences to its complements
for (i = 0; i < size ; i++)
{
if(dna[i]=='A')
dna[i]='T';
else if(dna[i]=='T')
dna[i]='A';
else if(dna[i]=='C')
dna[i]='G';
else if(dna[i]=='G')
dna[i]='C';
}
return dna;
}
/**
* Calculates and returns the reverse complement of a DNA sequence. In DNA sequences, 'A' and 'T'
* are complements of each other, as are 'C' and 'G'. The reverse complement is formed by
* reversing the symbols of a sequence, then taking the complement of each symbol (e.g., the
* reverse complement of "GTCA" is "TGAC").
*
* @param dna a string representing a DNA sequence of arbitrary length, containing only the
* characters A, C, G and T
*
* @return a String representation of the reverse complement of the given sequence
*/
public static String reverseComplement(String dna) {
return new String(reverseComplement(dna.toCharArray()));
}
}

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venereology answered 8 months ago

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