Restriction endonucleases are classified into four groups (Types
I, II III, and IV) based on their composition and enzyme cofactor,
the nature of their target sequence, and the position of their DNA
cleavage site relative to the target sequence.
The major differences are
- Type I enzymes: They cleave at sites remote from a
recognition site and require both ATP and S-adenosyl-L-methionine
and it a multifunctional protein with both restriction and
methylase characters.
- Type II enzymes very important enzymes are using in rDNA
technology and specifically cleave within or at short specific
distances from a recognition site and they require magnesium and
they perform single function (restriction) without methylation.
Example are ECOR1 and HIND3
- Type III enzymes cleave at sites a short distance from a
recognition site; require ATP or S-adenosyl-L-methionine and they
do have methylation activity.
- Type IV enzymes are involved in DNA modification e.g.
methylated, hydroxymethylated and glucosyl-hydroxymethylated
DNA.