Questions
5. The KEGG and NCBI databases contain a wealth of information obtained from sequencing and analyzing...

5. The KEGG and NCBI databases contain a wealth of information obtained from sequencing and analyzing the complete genome of Acinetobacter baumannii 1656-2, which is a medically important oxidase negative (cytochrome c oxidase- negative) bacterium that is multidrug resistant. For this microorganism, which statement regarding oxidative phosphorylation is correct?

This microbe possesses subunits of cytochrome c oxidase and therefore displays cytochrome c oxidase activity

The formation of ATP depends directly on the oxidation of cytochrome c.

The cytochrome bd complex allows oxygen to be reduced by the quinone pool

Subunit a of the F-type ATPase has 876 amino acids

In: Biology

1) The following DNA strand is a template strand of a prokaryotic gene.Transcription start siteis indicated...

1) The following DNA strand is a template strand of a prokaryotic gene.Transcription start siteis indicated by a bold “G”.

a) Underline the promoter region of this gene by a dotted line.

b)Underscore the Pribnow box in the promoter region. What is the function of the Pribnow box?

c) Deduce the nucleotide sequence of mRNA for this gene.

d) Underscore the leader sequence in mRNA and box the initiation codon. How many amino

acids does this mRNA code for? What is the sequence of the codons in this mRNA?

e) Show 5’ and 3’ ends of the template strand and mRNA.

f) What are the -10 and +10 base pairs of this gene?

CCCTCCGTCGCTATAATGAAGTCGGAGACGGATGTACCGCGGATAA

In: Biology

Match the term with the best definition Question 2 options: strand slippage loss of function mutation...

Match the term with the best definition

Question 2 options:

strand slippage

loss of function mutation

silent

depurination

in frame mutation

reverse mutation

Ames test

suppressor

expanding nucleotide repeats

epigenetic

pyrimidine dimers

base analog

Replication error

nonsense mutation

mutagen

intercalating agent

frame shift mutation

base substitution

1.

the alteration of a single nucleotide in DNA

2.

the addition or deletion of multiples of 3 nucleotides

3.

Potentially changes all amino acids downstream of mutation

4.

Can change chromatin structure or add amino acids

5.

Changes mutant back to wild type

6.

codes for a truncated polypeptide

7.

mutation that often occurs in wobble position

8.

Usually recessive

9.

Mutation that hides the effect of another mutation, but does not reverse sequence to wild-type

10.

When the wrong base is incorporated into DNA and the mismatch is not repaired and the wrong base permanently replaces the correct base

11.

Insertions or deletions are incorporated into DNA by ___.

12.

A spontaneous chemical change that can cause a mutation

13.

Any agent that significantly increases the rate of mutation above the spontaneous rate

14.

A mutagen with a structure similar to one of the four standard bases of DNA but with less stringent hydrogen bonding

15.

Can induce frame shift mutations by getting in between bases

16.

Mutation caused by UV radiation

17.

A means of identifying mutagens

18.

Changes that are heritable but not encoded by the DNA sequence and are reversible

In: Biology

Any t-RNA molecule is highly selective toward the amino acid to which it is linked in...

Any t-RNA molecule is highly selective toward the amino acid to which it is linked in forming an aminoacyl t-RNA. There is one t-RNA for every amino acid and chances of obtaining t-RNA molecules linked to wrong amino acids are rare. For example, the incorporation rate of valine into Ile-tRNA is 1 in 200 but the actual mis-incorporation occurs only at about 1 in 3000. Explain the reason for this phenomenon.
A.
EF-Tu-GTP-aminoacyl-t-RNA halts at the GTP hydrolysis step and the wrong amino-acyl-t-RNA is expelled from the A site
B.
The aminoacyl transferase that transfers the amino acid to the cognate t-RNA harbors an RNAse activity that degrades the incorrect aminoacyl-tRNA molecule
C.
The wrongly incorporated amino acid stimulates a nucleoprotein degradation complex, which degrades the wrong aminoacyl-t-RNA
D.
The aminoacyl transferase that transfers the amino acid to the cognate t-RNA harbors a hydrolytic site that accommodates the wrongly incorporated amino acid but not the correct amino acid
E.
A second molecule of the aminoacyl-t-RNA synthetase joins the complex to provide a hydrolytic pocket that removes the wrongly incorporated amino acid

2. How does cytosine in our DNA undergo spontaneous transformation to Uracil? Through what mechanism is this mutation repaired?
A.
The amine group undergoes oxidation into a keto group; Nucleotide-excision repair
B.
The amine group undergoes Sandmeyer reaction to diazonium salt, which upon attack from a water molecule gets converted to a hydroxyl group; Base-excision repair.
C.
Conversion of the amine into a nitroso group, which rearranges into a keto group; Base-excision repair.
D.
Hydrolysis of Schiff base; Base-excision repair
E.
Direct attack of the amine group by a water molecule; Nucleotide-excision repair

3. Explain the mechanism of transcriptional regulation by a typical steroid receptor.
A.
The ligand-bound steroid receptor trigger signaling to open phosphorylation-dependent calcium channels, which activate the Ca/CaMKIV in the nucleus, thereby phosphorylating and activating transcription factors
B.
Two Zinc fingers on each steroid receptor of a dimer bind to two palindromic sequences separated by three nucleotides on promoters
C.
Steroid-mediated signaling through its receptor causes activation of protein kinase C, which in turn phosphorylates and activates transcription factors to cause transcriptional regulation
D.
The ligand-bound steroid receptor stimulates protein kinase A, which through Rap-1 stimulates B-Raf and the Erk pathway, thereby phosphorylating and activating the transcription factor Rsk.

In: Biology

Fructose 2,6-bisphosphate has what effects on glycolysis and gluconeogenesis? A. Enhances glycolysis only. B. Enhances gluconeogenesis...

Fructose 2,6-bisphosphate has what effects on glycolysis and gluconeogenesis?

A.

Enhances glycolysis only.

B.

Enhances gluconeogenesis only/

C.

Inhibits glycolysis only

D.

Inhibits gluconeogenesis only.

E.

Enhances glycolysis/inhibits gluconeogenesis

F.

Inhibits glycolysis/enhances gluconeogenesis

In: Biology

BACKGROUND INFORMATION: Vinnie is a professional road cyclist participating in the 2020 Giro d’Italia, a three-week...

BACKGROUND INFORMATION:

Vinnie is a professional road cyclist participating in the 2020 Giro d’Italia, a three-week race nearly 3,600 km in distance with some stages exceeding altitudes of 2,700 m above sea level (i.e., Stelvio Pass, Italy). As the newly hired head of the high-performance team, it is your responsibility to manage his preparation for the event. You must demonstrate to your team a fundamental understanding of physiology, the chronic adaptations expected from his training, and methods that could be implemented to improve the likelihood of success.

QUESTION:

The longest leg of the race is 228 km, during which energy intake is critical. Glycolysis and β-oxidation are processes that break down carbohydrates (i.e., glucose, sucrose, fructose) and fatty acids, respectively.

A. Individually, what is the total ATP yield from one molecule of glucose and one molecule of palmitate?

B. How did you reach these numbers (i.e., substrate yield and use)?

C. Based on what you know about the yield and speed of these two pathways, do you recommend Vinnie ingest glucose or fatty acids during the race? (Hint, the cross-over concept)

In: Biology

The novel coronavirus, SARS-Cov2, which is responsible for the disease Covid-19 is a positive strand RNA...

The novel coronavirus, SARS-Cov2, which is responsible for the disease Covid-19 is a positive strand RNA ((+)ssRNA) virus. From what you learned in BIOL1020, suggest a model of how the SARS-Cov2 genome is replicated. The key enzyme for viral replication is unique to the virus and not found in the human host. What is the name of the enzyme, what is its enzymatic function, and how would you explain that a drug called Remdesivir (an adenosine analogue that causes premature termination of RNA synthesis) is currently the most promising drug against a range of RNA viruses, including Ebola ((-)ssRNA virus), MERS ( (+)ssRNA virus ) and SARS-Cov2 ((+)ssRNA virus)?

In: Biology

Like all viral pathogens, severe acute respiratory syndrome coronavirus 2, or SARS-CoV 2 (I know, how...

Like all viral pathogens, severe acute respiratory syndrome coronavirus 2, or SARS-CoV 2 (I know, how topical), requires a cell surface receptor in order to invade a given host cell. For SARS-CoV 2, this receptor is actually the enzyme Angiotensin Converting Enzyme 2, or ACE2. ACE2 is responsible for downregulation of the Renin-Angiotensin-Aldosterone System by deactivation of Angiotensin II. Explain the RAAS in detail, including the roles played by kidneys and the lungs, and then explain what effects using recombinant human ACE2, or rhACE2, to treat acute respiratory distress syndrome could have on blood pressure.

In: Anatomy and Physiology

Like all viral pathogens, severe acute respiratory syndrome coronavirus 2, or SARS-CoV 2 (I know, how...

Like all viral pathogens, severe acute respiratory syndrome coronavirus 2, or SARS-CoV 2 (I know, how topical), requires a cell surface receptor in order to invade a given host cell. For SARS-CoV 2, this receptor is actually the enzyme Angiotensin Converting Enzyme 2, or ACE2. ACE2 is responsible for downregulation of the Renin-Angiotensin-Aldosterone System by deactivation of Angiotensin II. Explain the RAAS in detail, including the roles played by kidneys and the lungs, and then explain what effects using recombinant human ACE2, or rhACE2, to treat acute respiratory distress syndrome could have on blood pressure.

In: Anatomy and Physiology

Please use C++ and linked list to solve this problem Linked list 1 -> 2 ->...

Please use C++ and linked list to solve this problem


Linked list 1 -> 2 -> 3 -> 4 -> 5-> 6 ->7

replaceNode( 5 , 6) // Replace 5 with 6

    result 1 -> 2 -> 3 -> 4 -> 6 -> 6 ->7

Base code

#include <iostream>

using namespace std;

class Node {
public:
    int data;
    Node *next;

    Node(int da = 0, Node *p = NULL) {
        this->data = da;
        this->next = p;
    }
};

class LinkedList {
private:
    Node *head, *tail;
    int position;
public:
    LinkedList() { head = tail = NULL; };

    ~LinkedList() {
        delete head;
        delete tail;
    };

    void print();
    void Insert(int da = 0);


}


void LinkedList::Insert(int da) {
    if (head == NULL) {
        head = tail = new Node(da);
        head->next = NULL;
        tail->next = NULL;
    } else {
        Node *p = new Node(da);
        tail->next = p;
        tail = p;
        tail->next = NULL;

}

}


int main() {
    cout << "Hello World!" << endl;
    LinkedList l1;
    l1.Insert(1);
    l1.Insert(2;
    l1.Insert(3);
    l1.Insert(4);
    l1.Insert(5);         l1.Insert(6);

l1.Insert(7);


    l1.print();

   l1.replaceNode( 5 , 6)

   l1.print();
    cout << "The End!" << endl;
    return 0;
}

    }

}

In: Computer Science