Questions
As discussed during the lecture, the enzyme HIV-1 reverse transcriptae (HIV-RT) plays a significant role for...

As discussed during the lecture, the enzyme HIV-1 reverse transcriptae (HIV-RT) plays a significant role for the HIV virus and is an important drug target. Assume a concentration [E] of 2.00 µM (i.e. 2.00 x 10-6 mol/l) for HIV-RT. Two potential drug molecules, D1 and D2, were identified, which form stable complexes with the HIV-RT.

The dissociation constant of the complex ED1 formed by HIV-RT and the drug D1 is 1.00 nM (i.e. 1.00 x 10-9 mol/l). The dissociation constant of the complex ED2 formed by HIV-RT and the drug D2 is 100 nM (i.e. 1.00 x 10-7 mol/l).

1) Compute the difference in binding free energy (at a physiological temperature T=310 K) for the complexes. Provide the difference as a positive numerical expression with three significant figures in kJ/mol.

2) Divide the difference between the binding free energies of the ED1 and ED2 complexes by the thermal energy (at the physiological temperature). Provide a numerical expression with 3 significant figures.

3)

Compute the total concentration of [D1]tot that is needed to bind 90% of the HIV-RT at the given concentration [E]tot. Provide your answer as a numerical expression with 3 significant figures in the unit mol/l.

You do NOT have to consider competition betwwen the drugs D1 and D2! They are administered separately.

4)

Compute the total concentration of [D1]tot that is needed to bind 99% of the HIV-RT at the given concentration [E]tot. Provide your answer as a numerical expression with 3 significant figures in the unit mol/l.

You do NOT have to consider competition betwwen the drugs D1 and D2! They are administered separately.

5)

Compute the total concentration of [D2]tot that is needed to bind 90% of the HIV-RT at the given concentration [E]tot. Provide your answer as a numerical expression with 3 significant figures in the unit mol/l.

You do NOT have to consider competition betwwen the drugs D1 and D2! They are administered separately.

6)

Compute the total concentration of [D2]tot that is needed to bind 99% of the HIV-RT at the given concentration [E]tot. Provide your answer as a numerical expression with 3 significant figures in the unit mol/l.

You do NOT have to consider competition betwwen the drugs D1 and D2! They are administered separately.

In: Biology

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